1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttagatgcttttgttttggatcaagcttgaaaatgaaggtgagttctaaattgttgtgattgctggggatgtttgttgatgtggtggaaatggtgtgtagGTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGATGAGAAGTTCTTCTGGAAAAATCTTTCTATAGACGAGTGCCGAAGACTT
species | Glycine max |
transcript | GLYMA03G25740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAA GTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGAEST: gi|20811614|gb|BQ296092.1|BQ296092
genomic: TCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAAgtgagtgagt ... tggtgtgtagGTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGA
EST: TCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAA GTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGAEST: gi|26047670|gb|CA784386.1|CA784386
genomic: TCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAAgtgagtgagt ... tggtgtgtagGTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGA
EST: TCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAA GTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGA
genomic: TCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAAgtgagtgagt ... tggtgtgtagGTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagatgcttttgttttggatcaagcttgaaaatgaaggtgagttctaaattgttgtgattgctggggatgtttgttgatgtggtggaaatggtgtgtagGTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGATGAGAAGTTCTTCTGGAAAAATCTTTCTATAGACGAGTGCCGAAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - gcttttg
- - - - - - - - - - - - gcttgaa
- - - - - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgga