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gtaaaaaaaaaatgggtggatcatggatgtgtggaaaacatgctcacatcacaggcatttactttttgtgattttgaaacttttgtttgaatttttcggtttcttctatactgatagGGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGAAAAAG
species | Glycine max |
transcript | GLYMA03G23870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTGGAG GGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGAEST: gi|213602852|gb|DB970543.1|DB970543
genomic: CCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTGGAGgtaaaaaaaa ... atactgatagGGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGA
EST: CCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTGGAG GGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGAEST: gi|13480064|gb|BG509407.1|BG509407
genomic: CCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTGGAGgtaaaaaaaa ... atactgatagGGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGA
EST: GGATTCTCTTTCAGTGGAG GGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGAEST: gi|151407763|gb|EV277578.1|EV277578
genomic: GGATTCTCTTTCAGTGGAGgtaaaaaaaa ... atactgatagGGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGA
EST: CCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTGGAG GGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGA
genomic: CCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTGGAGgtaaaaaaaa ... atactgatagGGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGA
tttttgtgattttgaaacttttgtttgaatttttcggtttcttctatactgatagGGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGAAAAAG
tttcttctat CT-rich tract
ttttgtttgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaaaaatgggtggatcatggatgtgtggaaaacatgctcacatcacaggcatttactttttgtgattttgaaacttttgtttgaatttttcggtttcttctatactgatagGGAAGTATTCAGATGGCCCTAGTCCAAGTGATGAATGGTTTAAGCAAGGGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG