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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaagttttgacttgtcaatatgcattagcaatactatggtgaaactgagttttatgccctagtttttgcttactattgatgatctctgtctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG

Basic information

species Glycine max
transcript GLYMA03G21680.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G21680.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 3'ss of exon 2
tgaagttttgacttgtcaatatgcattagcaatactatggtgaaactgagttttatgcc-ctagtt-tttgcttactattg--atgatctctgtctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG
   |  ||  |  | || || |    || | || ||||      |   |  ||||||||  |||||  || ||||   |||  ||  ||  |   |  || ||| |||| |||| ||| |||||  ||| ||| ||||||||||||| ||| |||||||||||||||
--tatattctatctatctatctat-ctatctat-ctatatatgtatatatatttatgccattagttgcttacttatgtttgggatcttcctttcattgttacagTATAAGCCAGAATCTTGTGACATTCAGGCTCACAAAGGTGACAAAGTGAAAGTACACTATCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193386531|gb|FK349541.1|FK349541
EST:     AAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: AAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298174852|gb|HO017961.1|HO017961
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAATCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|58020884|gb|CX707626.1|CX707626
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31465725|gb|CD407753.1|CD407753
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193579697|gb|FK536382.1|FK536382
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208332107|gb|GE127714.1|GE127714
EST:     CGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: CGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208123014|gb|GD923678.1|GD923678
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31561045|gb|CD486883.1|CD486883
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|207681089|gb|GD664104.1|GD664104
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|18734962|gb|BM528486.1|BM528486
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|207758153|gb|GD727247.1|GD727247
EST:     CGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: CGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|58020461|gb|CX707203.1|CX707203
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31461804|gb|CD403832.1|CD403832
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208181508|gb|GD974145.1|GD974145
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193387691|gb|FK350952.1|FK350952
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192306620|gb|FG998816.1|FG998816
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGGAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|19268794|gb|BM885050.1|BM885050
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|8284542|gb|BE022110.1|BE022110
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193629314|gb|FK575406.1|FK575406
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208282062|gb|GE079348.1|GE079348
EST:     CGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: CGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|151393707|gb|EV263582.1|EV263582
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|151393109|gb|EV262984.1|EV262984
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACGGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|58021248|gb|CX707990.1|CX707990
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|7640573|gb|AW734935.1|AW734935
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31463910|gb|CD405938.1|CD405938
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|19054065|gb|BM732732.1|BM732732
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|14258994|gb|BG881902.1|BG881902
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31476666|gb|CD418694.1|CD418694
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|8826541|gb|BE210271.1|BE210271
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192306619|gb|FG998815.1|FG998815
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGGAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31305716|gb|CD390919.1|CD390919
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|7145658|gb|AW507580.1|AW507580
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31312013|gb|CD397216.1|CD397216
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|151410901|gb|EV280716.1|EV280716
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208178817|gb|GD975298.1|GD975298
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|19054231|gb|BM732898.1|BM732898
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208245805|gb|GE044733.1|GE044733
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|22523442|gb|BU082253.1|BU082253
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|17022453|gb|BM093487.1|BM093487
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193648424|gb|FK597115.1|FK597115
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAGAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|151408353|gb|EV278161.1|EV278161
EST:     TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
EST: gi|207768799|gb|GD740050.1|GD740050
EST:     CGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG                         CATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA
genomic: CGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAGgtgtagcctt ... ctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagttttatgccctagtttttgcttactattgatgatctctgtctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG
                                      tctctgtctctttcc  CT-rich tract
               tagttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaagttttgacttgtcaatatgcattagcaatactatggtgaaactgagttttatgccctagtttttgcttactattgatgatctctgtctctttccagCATAAACCAGCATCATGTGAAGTTCTGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG

- - - - tgacttg
- - - - - - - - - - -tgcatta
- - - - - - - - - - - - - - - - - -tatggtg
- - - - - - - - - - - - - - - - - - - - - - -ctgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat