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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAG

Basic information

species Glycine max
transcript GLYMA03G16660.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G16660.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 1
gtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAG
                           || ||||||    || | | ||||       ||| ||||| |  | |  |   |  | |||  |   | ||| ||||   |  |||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| ||| | || || ||||
-------------------------gtaagtaattta---ttcactagattcac----atgcagagactcatattttcgatcttctcacatctctatgt-gtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411475|gb|EV281286.1|EV281286
EST:     CGGTTTATCATGGGGGATAGTCAGTATCCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCGTGCTTTGACAGCCGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTC
EST: gi|9899371|gb|BE608339.1|BE608339
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAG
                            aactaat  putative branch site (score: 2)
                            aactaatt  TA-rich tract