1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctttattgtgttcttactatcctttgtgggtgtgaataattttatttatgattagccaacagtaaacaaatgccttagctttatttgtgcatgttatagGTAATGGTTGTCACCACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCAAATTAATTGGATCCCGAAG
species | Glycine max |
transcript | GLYMA03G14200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAATCGTTTTCAGAACTTTATAAAATACCTTCGTGAAATGGGAGATGAG GTAATGGTTGTCACCACACATGAAGGAGTAEST: gi|209708143|gb|BW671159.1|BW671159
genomic: AAAATCGTTTTCAGAACTTTATAAAATACCTTCGTGAAATGGGAGATGAGgtaacatttt ... catgttatagGTAATGGTTGTCACCACACATGAAGGAGTA
EST: AAAATCGTTTTCAGAACTTTATAAAATACCTTCGTGAAATGGGAGATGAG GTAATGGTTGTCACCACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCEST: gi|15664172|gb|BI701543.1|BI701543
genomic: AAAATCGTTTTCAGAACTTTATAAAATACCTTCGTGAAATGGGAGATGAGgtaacatttt ... catgttatagGTAATGGTTGTCACCACACATGAAGGAGTACCCAAGGAATTTTATGGAGCC
EST: AAAATCGTTTTCAGAACTTTATAAAATACCTTCGTGAAATGGGAGATGAG GTAATGGTTGTCACCACACATGAAGGAGTACCCAAGGAATTTTATGGAGCC
genomic: AAAATCGTTTTCAGAACTTTATAAAATACCTTCGTGAAATGGGAGATGAGgtaacatttt ... catgttatagGTAATGGTTGTCACCACACATGAAGGAGTACCCAAGGAATTTTATGGAGCC
tttatgattagccaacagtaaacaaatgccttagctttatttgtgcatgttatagGTAATGGTTGTCACCACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCAAATTAATTGGATCCCGAAG
taaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttattgtgttcttactatcctttgtgggtgtgaataattttatttatgattagccaacagtaaacaaatgccttagctttatttgtgcatgttatagGTAATGGTTGTCACCACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCAAATTAATTGGATCCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -tgtgttc
- - - - - - - - - - tcctttg
- - - - - - - - - - - - - - gggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcct