1 5' 3' | 2 5' 3' | 3 5' 3' |
...agaaagtgtcactagctttcaccattttatatcagtattttacaaaggtataatttgtgttatgacaatatgtctaattataaaaatttgaatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTG
species | Glycine max |
transcript | GLYMA03G14150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCA ATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCTEST: gi|13252677|gb|BG363580.1|BG363580
genomic: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAgtgagtaaaa ... aatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCT
EST: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCA ATTTTGGCACCACTGCCTATTGGTTTTGCTGAGTTTCTAGTGCATTTGGCTEST: gi|151407060|gb|EV276875.1|EV276875
genomic: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAgtgagtaaaa ... aatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCT
EST: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCA ATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCTEST: gi|18733869|gb|BM527859.1|BM527859
genomic: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAgtgagtaaaa ... aatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCT
EST: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCA ATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCTEST: gi|151412817|gb|EV282629.1|EV282629
genomic: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAgtgagtaaaa ... aatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCT
EST: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCA ATTTTGGCACCACTGCCTATTGGGTTTTGCTGTGTTTCTAGTGCATTTGGCEST: gi|192296869|gb|FG991910.1|FG991910
genomic: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAgtgagtaaaa ... aatggatcagATTTTGGCACCACTGCCTATTGG-TTTTGCTGTGTTTCTAGTGCATTTGGC
EST: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCA ATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCT
genomic: TCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAgtgagtaaaa ... aatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCT
aggtataatttgtgttatgacaatatgtctaattataaaaatttgaatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTG
gtctaat putative branch site (score: 3)
ttatgacaatatgtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaagtgtcactagctttcaccattttatatcagtattttacaaaggtataatttgtgttatgacaatatgtctaattataaaaatttgaatggatcagATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - -cactagc
- - - - - - - - - tcaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa