1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtttgcattcatccttaatttgtttcacttatagaatccacatattcacaagtagaacaaaccattatcttgtgtaattttcatggctttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGATTAATGTTGTTTTGGCTAACTATCCACCTCCTCTTCCAAAGCGGATTCTT
species | Glycine max |
transcript | GLYMA03G07550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAA GGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGATEST: gi|192315735|gb|FK011203.1|FK011203
genomic: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAAgtttgttcaa ... ttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGAT
EST: GCACTTCCTGCTCTTACAA GGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGATEST: gi|6719567|gb|AW307214.1|AW307214
genomic: GCACTTCCTGCTCTTACAAgtttgttcaa ... ttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGAT
EST: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAA GGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGATEST: gi|192315734|gb|FK011202.1|FK011202
genomic: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAAgtttgttcaa ... ttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGAT
EST: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAA GGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGATEST: gi|10843518|gb|BF066807.1|BF066807
genomic: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAAgtttgttcaa ... ttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGAT
EST: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAA GGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGAT
genomic: GGAATTGGCAACACCGTGAGCATTGACTTCTGCACTTCCTGCTCTTACAAgtttgttcaa ... ttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGAT
attcacaagtagaacaaaccattatcttgtgtaattttcatggctttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGATTAATGTTGTTTTGGCTAACTATCCACCTCCTCTTCCAAAGCGGATTCTT
ctttttctgc CT-rich tract
taattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttgcattcatccttaatttgtttcacttatagaatccacatattcacaagtagaacaaaccattatcttgtgtaattttcatggctttttctgcagGGGAAATGCAGTAACAGTTAAAAACATGCTGGAATCTGAATTTCCTGGGATTAATGTTGTTTTGGCTAACTATCCACCTCCTCTTCCAAAGCGGATTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - gcattca
- - - - - - - - - - - - - - - - - - - -ccacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggct