1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgttacactctcattttttgttaaattcttaatgggtttttggtttttggtacattgggttcattactttgatgggttattgttaatgggttatttgcgtttttatttttcttatgttgatgagttatgttttgttttgttttaattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA
species | Glycine max |
transcript | GLYMA03G07420.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACA GGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGEST: gi|192330310|gb|FK020580.1|FK020580
genomic: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAgtgtgttaca ... aattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
EST: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACA GGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGEST: gi|193520125|gb|FK474196.1|FK474196
genomic: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAgtgtgttaca ... aattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
EST: CGCCGCGGAGATTGTTAACA GGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGEST: gi|7685524|gb|AW756172.1|AW756172
genomic: CGCCGCGGAGATTGTTAACAgtgtgttaca ... aattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
EST: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACA GGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGEST: gi|151408709|gb|EV278517.1|EV278517
genomic: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAgtgtgttaca ... aattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
EST: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACA GGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGEST: gi|213591699|gb|DB969799.1|DB969799
genomic: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAgtgtgttaca ... aattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
EST: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACA GGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGEST: gi|192299906|gb|FG991780.1|FG991780
genomic: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAgtgtgttaca ... aattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
EST: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACA GGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
genomic: TTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAgtgtgttaca ... aattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTG
gtttttatttttcttatgttgatgagttatgttttgttttgttttaattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA
ttttaat putative branch site (score: 3)
agttatgttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttacactctcattttttgttaaattcttaatgggtttttggtttttggtacattgggttcattactttgatgggttattgttaatgggttatttgcgtttttatttttcttatgttgatgagttatgttttgttttgttttaattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG