Sequence
atgc intronic sequence ATGC exonic sequencegtcttattctcttgttgattaatgtcagtcgtgatttgccttgatttgtggatgacttgttggatacagGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCC
Basic information
species | Glycine max |
transcript | GLYMA03G05150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G05150.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 3'ss of exon 10
-----------------------------------gtcttattctcttgttgattaatgtcag----------tcgtgatttgccttgatttgtggatgacttgttggatacagGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCC
|| ||| || ||| |||| ||| || | || | ||| ||| ||| || || | |||||||||||| |||||||| || ||||| || ||| | || |||||||| ||||||||||| ||||||||||||| ||||| || | || ||||||| |
gtttgactgacttgatggactatttcttgtctgttgtaaaattatcaaactgaataatttcaaaacctaagaatcttttgttatttctttttttggctgatttcatgcaaacagGAAGACTTTGGAGGAGGGCATCCAGATCCTAATCTAACCTATGCAAAGGAGTTGGTTGCATGTATGGGATTGGGTAAATCAGATGCTAAAAATGAGCCAC
upper sequence: GLYMA03G05150.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S4_12V6.3 (Physcomitrella patens), 3'ss of exon 10
-------------------------gtcttattctct-tgttgattaatgtcagtcgtgatttgccttgatttgtggatgact-----tgttggatacagGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCC-
| || | || | ||| | | || || | || | || || | || || |||||||||||||| ||||| ||||| || ||||||||||| || || || || | || ||||||||||||||| || |||| | || || ||
ttgtgctaacttaattagctgggtagaaacatctccagtgcaggcgaatacttttttagtttctccacgcttctttaataacaaactattttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAACTCGTGCAAGTTATGGGATTGGGCAAGACTCAACCTGACGA-GATTCCGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgattaatgtcagtcgtgatttgccttgatttgtggatgacttgttggatacagGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCC
ttgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcttattctcttgttgattaatgtcagtcgtgatttgccttgatttgtggatgacttgttggatacagGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG