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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgtatggtgtctccatcattcattaatggtgcagctattttattcagaatttaaggagctaccaattctgagtgcttatattttgctttatttttcagGCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAG

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 1
----catgtatggtgtctccatcattcattaatggtgcagctattttattcagaatttaaggagctaccaattctgagtgcttatattttgctttatttttcagGCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAG
        ||      ||  ||   | ||   |  |  |   | |||||  | ||  |    || | ||  |||||| || |  ||| ||  |||| | | ||||| ||||||||||| ||||||||||||||||| || |||
atggatcataaaaatgctaaattcctaatatttcttatattaaatttatgtaaaaccttca-agttgcc--ttctgaatgttgctatatttttttaatgt-cagGCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAG

upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 3'ss of exon 1
----catgtatggtgtctccatcattcattaatggtgcagctattttattcagaatttaaggagctaccaattctgagtgcttatattttgctttatttttcagGCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAG
        ||      ||  ||   | |    |  |  |   | |||||  | ||  |     | | ||  |||||| || |  ||| ||  |||| | | ||||| ||||||||||| ||||||||||||||||| || |||
atggatcataaaaatgctaaattcctaacatttcttatattaaatttatgtaaaaccttcat-gttgcc--ttctgaatgttgctatatttttttaatgt-cagGCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707340|gb|BW670619.1|BW670619
EST:     TTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAG                         GCCAATGATGCACAGCTTAGTACAATGGTTGCCGAACAG
genomic: TTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGgtttcagttc ... tatttttcagGCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagaatttaaggagctaccaattctgagtgcttatattttgctttatttttcagGCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAG
                                     ttttgctttatttttc  CT-rich tract
                                ttatattttgctttat  TA-rich tract