1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaatatgctttctagagatgatggttctccaattaataattttttttggatagcatatatcttccttaacaaatgactgatgcaattctatggtgtacagACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGGCATGGGAAGAAAGTGAAAAATCCAAAGCAGAGAATAA
species | Glycine max |
transcript | GLYMA03G01550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATACCAGAACCTGTAAAAAAGAATGCCACAGGTGGATCCCTTGATAGAG ACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGGEST: gi|213602853|gb|DB970544.1|DB970544
genomic: GATACCAGAACCTGTAAAAAAGAATGCCACAGGTGGATCCCTTGATAGAGgttggtgtta ... tggtgtacagACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGG
EST: GATACCAGAACCTGTAAAAAAGAATGCCACAGGTGGATCCCTTGATAGAG ACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGGEST: gi|19268837|gb|BM885093.1|BM885093
genomic: GATACCAGAACCTGTAAAAAAGAATGCCACAGGTGGATCCCTTGATAGAGgttggtgtta ... tggtgtacagACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGG
EST: GATACCAGAACCTGTAAAAAAGAATGCCACAGGTGGATCCCTTGATAGAG ACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGG
genomic: GATACCAGAACCTGTAAAAAAGAATGCCACAGGTGGATCCCTTGATAGAGgttggtgtta ... tggtgtacagACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGG
ttggatagcatatatcttccttaacaaatgactgatgcaattctatggtgtacagACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGGCATGGGAAGAAAGTGAAAAATCCAAAGCAGAGAATAA
gactgat putative branch site (score: 3)
atatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatgctttctagagatgatggttctccaattaataattttttttggatagcatatatcttccttaacaaatgactgatgcaattctatggtgtacagACATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGGCATGGGAAGAAAGTGAAAAATCCAAAGCAGAGAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -tgctttc
- - - - - - - - gatgatg
- - - - - - - - - - - - ttctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgc