Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacacgcacgctcggtctttctaaaaaaattgttgacctgtttgtttgttgttagtgattttaataatgtcaattgtgttgttggaagtgcttttagtcgagatattgaattgtaagtttttgtttttttttttttttatttgggtgtggttaaattgggcgtttgttattttcttagGAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG

Basic information

species Glycine max
transcript GLYMA03G00470.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337951|gb|CO981817.1|CO981817
EST:     AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAG                         GAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA
genomic: AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacacgc ... attttcttagGAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA
EST: gi|193389845|gb|FK353610.1|FK353610
EST:     AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAG                         GAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA
genomic: AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacacgc ... attttcttagGAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttttttttatttgggtgtggttaaattgggcgtttgttattttcttagGAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG
                                       tttgttattttctt  CT-rich tract
     ttttttttttattt  TA-rich tract