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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctctagcttgtatttctgttgcataatggataaatatgcactatttaactgtcaggagttttataaatattttgttcaggtggtgctaaatgccatcttgaaaatataaattgaatttgtcatcttagtctagtttattccttcatttacttaaattaattcgagggttgcccctgtcgcagGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCAGTGATGTTTGGACGTGTCTTGCAAGGTGTGGACTCTTCGA

Basic information

species Glycine max
transcript GLYMA03G00450.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00450.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G01920.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgctctagcttgtatttctgttgcataatggataaatatgcactatttaactgtcaggagttttataaatattttgttcaggtggtgctaaatgccatcttgaaaatataaattgaatttgtcatcttagtctagtttattccttcatttacttaaattaattcgagggttgcccctgtcgcagGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCAGTGATGTTTGGACGTGTCTTGCAAGGTGTGGACTCTTCGA
                                                                                                     ||    | | | ||    ||   ||     |   ||||||   | |  | |     || |||   | | || |  |     |||||||| |||  ||| |||||||||||||||||||| | ||||||||| || ||||| ||  | |||||||| || ||  | ||||| || || |||  ||
--------------------------------------------------------------------------------------------------gtgtggtcttcttacttacccttacaatgaatctgctgtttatagttgcgatgatgatgatgaatgaaatgttttcttca---acagGGAGACCGTGATCTCGCTGATTACATGAAAGATCGGAGCTTTCCTTCTAATTTGGAGTCCATCATGTTTGGGCGCGTTCTCCAAGGAGTCGAGTCTGTGA

upper sequence: GLYMA03G00450.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0058g01450.t01 (Vitis vinifera), 3'ss of exon 2
gtgctctagcttgtatttctgttgcataatggataaatatgcactatttaactgtcaggagttttataaatattttgttcaggtggtgc-taaatgccatcttgaaaatataaattgaatttgtcatcttagtctagtttattccttcatttacttaaattaattcgagggttgcccctgtcgcagGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCAGTGATGTTTGGACGTGTCTTGCAAGGTGTGGACTCTTCGA
                                                                         |||||| || ||     |   ||  || |  || |   | ||||  | |    |  |||     |  |   |  ||        || |  ||       |  |  |||  ||||||||| |    ||||| || |||||||||||||| ||||| |||| ||||||||| ||    |||||||| ||||||||||||||  | |  ||     
-----------------------------------------------------------------------cctttgttaagttgacttgtttgtgtgatatgcaaga---agattgg-tgtacagttatagatgcataaaaggcagcacc------aactgcttt-----ctctctgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAACTTGGAGTCTACTATGTTTGGGCGTGTCTTGCAAGGACTAGGTTCAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctagtttattccttcatttacttaaattaattcgagggttgcccctgtcgcagGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCAGTGATGTTTGGACGTGTCTTGCAAGGTGTGGACTCTTCGA
                          aattaat  putative branch site (score: 3)
                                        ttgcccct  putative PPT
      tttattccttcattta  TA-rich tract