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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcatgcacttatttgatttgaatttgatcacttgctattgaattggatggtaattgttcttggcttggctatgatcagGTGAGATGGCTTTACTAGTTGAGGGTCTTGGAGTTGGGCGTGATACCGCTATAGAAGAGTACATAATTGGTCCAGCGGTCAATGAATTCAGTGAGGCAGA

Basic information

species Glycine max
transcript GLYMA02G48150.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G48150.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S47_244V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------gttagtcatgcacttatttg-atttgaatttgatcacttgctattgaattggatggtaattgttcttggcttggctatgatcagGTGAGATGGCTTTACTAGTTGAGGGTCTTGGAGTTGGGCGTGATACCGCTATAGAAGAGTACATAATTGGTCCAGCGGTCAATGAATTCAGTGAGGCAGA
                    |  |  |  | || |||  || |   | || ||  |     ||   |||  ||    | |   ||    | | ||||  |||| || ||| | ||||||||||||||||||||||||||   ||| ||   |||||||||||   |  |    ||| | |  ||    | ||  || |  ||
gctctgaattccgtttcaaatgcttgtaaattttttttcatgtacttctggtcgttaatgttttctttgtttgac--tcgaattttatctcggtatgtgcagGAGAAATGTCCTTACTAGTTGAGGGTCTTGGAGTTGGTGCTGAAACGCATATAGAAGAGTGGTTGTTGAAGCCATCTGAGAAACCTTCCAAGGATGATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatcacttgctattgaattggatggtaattgttcttggcttggctatgatcagGTGAGATGGCTTTACTAGTTGAGGGTCTTGGAGTTGGGCGTGATACCGCTATAGAAGAGTACATAATTGGTCCAGCGGTCAATGAATTCAGTGAGGCAGA
 atttgat  putative branch site (score: 5)
            tattgaatt  TA-rich tract