1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtctttcatcaaacattttggcttttatatatagagagtgtttttatacccttttatttgctagttgacttcatatgtttgatttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTACCCTGTCATCTCTATCTGCCACCAAGCTAGGCTCTATAGCTATTGAAG
species | Glycine max |
transcript | GLYMA02G47860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTAEST: gi|193315220|gb|FK282616.1|FK282616
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATEST: gi|298197389|gb|HO044868.1|HO044868
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAAT
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTAGTGTTGCACGTACACCAATGTGTGGATTTCTTGGTAEST: gi|193306951|gb|FK268803.1|FK268803
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTAEST: gi|193376725|gb|FK340920.1|FK340920
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTAEST: gi|207793311|gb|GD765595.1|GD765595
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTAEST: gi|193307600|gb|FK270628.1|FK270628
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTAEST: gi|208133993|gb|GD927866.1|GD927866
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGEST: gi|193369201|gb|FK337093.1|FK337093
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGG
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTAEST: gi|208032921|gb|GD829978.1|GD829978
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTAEST: gi|298168588|gb|HO009518.1|HO009518
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
EST: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG ATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
genomic: ATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGgtctttcatc ... atttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTA
agtgtttttatacccttttatttgctagttgacttcatatgtttgatttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTACCCTGTCATCTCTATCTGCCACCAAGCTAGGCTCTATAGCTATTGAAG
tttctat CT-rich tract
ttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttcatcaaacattttggcttttatatatagagagtgtttttatacccttttatttgctagttgacttcatatgtttgatttctatagATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTACCCTGTCATCTCTATCTGCCACCAAGCTAGGCTCTATAGCTATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG