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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttttcagtcacacttatgtttgaattagttagttattgttcagtacttgcataaccccttgaaatagtactaattttttgttgtttttctatatgtacagAACATGCATCTATGCAACGGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTAGACCCAAC

Basic information

species Glycine max
transcript GLYMA02G47230.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47230.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G039431_T01 (Zea mays), 3'ss of exon 1
gtacttttttcagtcacacttatgtttgaattagttagttattgttcagtacttgcataaccccttgaaatagtactaattttttgt-tgtttttctatatgtacagAACATGCATCTATGCAACGGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTAGACCCAAC
                      |   ||   | |  | |||||    |  |   | | | |  || ||  |  |      ||  ||  |    |   ||    |||||  | || || |||||||||||||| |||||||| || |||||||| || || |||||  | || ||| ||||||| || |||||||| || ||||| ||
---------------------gtaaatgtcatggccatttatttcctaaaaa--gaacagctactggactttttttcttcttggtgcctaaaatcaaatcaaaacagAGTACGCGTCCATGCAACGGATCACGGAGAAGAGCGACGTGTACAGCTTCGGCGTGGTGGTGCTGGAGATCCTGACGGGGAGGCACCCGCTGGACCCGAC

upper sequence: GLYMA02G47230.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0015g01120.t01 (Vitis vinifera), 3'ss of exon 2
gtacttttttcagtcacacttatgtttgaattagttagttattgttcagtacttgcataaccccttgaaatagtactaatttttt-----gttgtttttct----atatgtacagAACATGCATCTATGCAACGGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTAGACCCAAC
||| || ||  | ||    ||||  ||       ||| ||| ||||   |  |     |   | ||  | || || | |||||||      || || ||||     | |  ||||||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||||||| || || |||||  ||||||||||||| ||| ||||||||||
gtaattcttcaattccattttattgttattaattttaattaatgtt--attttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcataaccccttgaaatagtactaattttttgttgtttttctatatgtacagAACATGCATCTATGCAACGGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTAGACCCAAC
                      tactaat  putative branch site (score: 1)
                                      tttttctat  putative PPT
                aaatagtactaatttt  TA-rich tract