1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcaggcactctacttgtatagtttttgctatgatgtgatttgtttttgtggctactgtcttgtttctttgctgaattttttgagaaattgaggggtggcctttgattcaaattgcctgatagtgatgcagGTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTGTTTATAACGGC
species | Glycine max |
transcript | GLYMA02G46530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAG GTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAGEST: gi|192327915|gb|FK022460.1|FK022460
genomic: TGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAGgtcaggcact ... agtgatgcagGTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAG
EST: TGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAG GTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAG
genomic: TGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAGgtcaggcact ... agtgatgcagGTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAG
ttttttgagaaattgaggggtggcctttgattcaaattgcctgatagtgatgcagGTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTGTTTATAACGGC
gcctgat putative branch site (score: 4)
attcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggcactctacttgtatagtttttgctatgatgtgatttgtttttgtggctactgtcttgtttctttgctgaattttttgagaaattgaggggtggcctttgattcaaattgcctgatagtgatgcagGTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTGTTTATAACGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT