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gtactgtctcaagtctctagtctgattcctattccatatgatttattttattttatttgcagAGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG
species | Glycine max |
transcript | GLYMA02G46380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAEST: gi|213617892|gb|DB957373.1|DB957373
genomic: AGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctc ... ttatttgcagAGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAA
EST: GAAGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAEST: gi|8826851|gb|BE210581.1|BE210581
genomic: GAAGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctc ... ttatttgcagAGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAA
EST: AGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAEST: gi|209708509|gb|BW668119.1|BW668119
genomic: AGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctc ... ttatttgcagAGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAA
EST: GAAGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAA
genomic: GAAGATCAAGGAAGGAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctc ... ttatttgcagAGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAA
ctcaagtctctagtctgattcctattccatatgatttattttattttatttgcagAGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG
gtctgat putative branch site (score: 4)
ttttatttt putative PPT
attcctattccatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtctcaagtctctagtctgattcctattccatatgatttattttattttatttgcagAGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT