Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaacataattagttgttcttgcttataagtatctctgctgtcttctttctttcttgctaactaaagcgtttctttgtttgcttctgtcaccaaaataagGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAG

Basic information

species Glycine max
transcript GLYMA02G46350.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46350.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 3'ss of exon 2
-ttaacataattagttgttcttgcttataagt--atctctgctgtcttctttctttcttgctaactaaagcgtttctttgtttgcttctgtcaccaaaataagGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAG
 ||  || ||  | |||       || |   |  || |  | |||||      |  ||  ||     |||| | |  |  ||  ||||||        ||| | | ||||||||||||||||||||| ||||||| |||||||||||||  || |||||  |||| ||||||
cttggca-aagcatttgaagccttttgttgattcatttaagttgtctaagaggtg-ctaactgtgagaagcttatgctgtttctcttctggtttgttgata-gATCTGGGCTATTGCAGATTCAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193396717|gb|FK362289.1|FK362289
EST:     CCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAG                         GTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAA
genomic: CCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGgtattctggt ... ccaaaataagGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAA
EST: gi|17518867|gb|BM187909.1|BM187909
EST:     CCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAG                         GTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAA
genomic: CCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGgtattctggt ... ccaaaataagGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctttcttgctaactaaagcgtttctttgtttgcttctgtcaccaaaataagGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAG
                                               aaaataa  TA-rich tract