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...aagatacttaatttattttactttcgtattttctgctcctgccaaataggaccttagtctatttgcttcttgaagcttacattttaaaaactatactcagGGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACAGACAG
species | Glycine max |
transcript | GLYMA02G46300.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG GGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACAEST: gi|151398595|gb|EV268466.1|EV268466
genomic: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTGgtaatgtaga ... ctatactcagGGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACA
EST: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG GGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACAEST: gi|208058183|gb|GD859782.1|GD859782
genomic: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTGgtaatgtaga ... ctatactcagGGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACA
EST: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG GGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACAEST: gi|208322368|gb|GE122577.1|GE122577
genomic: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTGgtaatgtaga ... ctatactcagGGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACA
EST: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG GGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCGCA
genomic: TGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTGgtaatgtaga ... ctatactcagGGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACA
ataggaccttagtctatttgcttcttgaagcttacattttaaaaactatactcagGGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACAGACAG
agcttac putative branch site (score: 3)
ttacattttaaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagatacttaatttattttactttcgtattttctgctcctgccaaataggaccttagtctatttgcttcttgaagcttacattttaaaaactatactcagGGCGCTTGGGAGTTATTGATCATGACGTGGTTGAGCTGAATAATATGCACAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - -tttctgc
- - - - - - - - - - - - - - - - - - tcctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttaca