1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgcaatttaaaaccttgagtaagattttagtaataaaaacacgaatgctcagtgatgattcatgattgtttcataatctgatttttgtggaccatcacagCTCTTTCCAGATCTAAACAAGGTAGTATTGCTGGATGATGATGTGGTAGTACAACATGACCTATCTTCTTTGTGGGAACTAGATCTTAATGGCAAAGTCA
species | Glycine max |
transcript | GLYMA02G45720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tgctcagtgatgattcatgattgtttcataatctgatttttgtggaccatcacagCTCTTTCCAGATCTAAACAAGGTAGTATTGCTGGATGATGATGTGGTAGTACAACATGACCTATCTTCTTTGTGGGAACTAGATCTTAATGGCAAAGTCA
atctgat putative branch site (score: 4)
ataatctgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaatttaaaaccttgagtaagattttagtaataaaaacacgaatgctcagtgatgattcatgattgtttcataatctgatttttgtggaccatcacagCTCTTTCCAGATCTAAACAAGGTAGTATTGCTGGATGATGATGTGGTAGTACAACATGACCTATCTTCTTTGTGGGAACTAGATCTTAATGGCAAAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - agtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg