1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaacaataacaatttaaaaattaactttgatagtaaaacatacacatatgctcattttaagatctagtggcccaattatttattgattgcttattacagATATCCACCACATGGAAGAAGGGCAGTTGCAGTAGAGCATGGCATTCCATGGGAAAGGCTAAGAGCACCACCTGTTGATACTCCTCCACATGATCTTCAT
species | Glycine max |
transcript | GLYMA02G44660.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATGATGCTGAGCTTAGCTATGATCCTCACACTGACACCTTCCAGGCCAG ATATCCACCACATGGAAGAAGGGCAGTTGCAGTAGAGCATGGCATTCCATGEST: gi|6482324|gb|AW201591.1|AW201591
genomic: TATGATGCTGAGCTTAGCTATGATCCTCACACTGACACCTTCCAGGCCAGgtaatttaat ... cttattacagATATCCACCACATGGAAGAAGGGCAGTTGCAGTAGAGCATGGCATTCCATG
EST: TATGATGCTGAGCTTAGCTATGATCCTCACACTGACACCTTCCAGGCCAG ATATCCACCACATGGAAGAAGGGCAGTTGCAGTAGAGCATGGCATTCCATG
genomic: TATGATGCTGAGCTTAGCTATGATCCTCACACTGACACCTTCCAGGCCAGgtaatttaat ... cttattacagATATCCACCACATGGAAGAAGGGCAGTTGCAGTAGAGCATGGCATTCCATG
catatgctcattttaagatctagtggcccaattatttattgattgcttattacagATATCCACCACATGGAAGAAGGGCAGTTGCAGTAGAGCATGGCATTCCATGGGAAAGGCTAAGAGCACCACCTGTTGATACTCCTCCACATGATCTTCAT
tattgat putative branch site (score: 3)
aattatttattgattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaacaataacaatttaaaaattaactttgatagtaaaacatacacatatgctcattttaagatctagtggcccaattatttattgattgcttattacagATATCCACCACATGGAAGAAGGGCAGTTGCAGTAGAGCATGGCATTCCATGGGAAAGGCTAAGAGCACCACCTGTTGATACTCCTCCACATGATCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC