1 5' 3' | 2 5' 3' |
...tcattgatgctactttggtttagatgccaattaagtttgcaaaaaaaaataaaaattgatattgattactaaccaagcttcacacatattgcatttacagCACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGCCAGTCAGCTGAAGTTTCACTGGGTGGAGCGATATGACAAACTTCTTGTTGGT
species | Glycine max |
transcript | GLYMA02G44180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAG CACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGCCAGEST: gi|151411756|gb|EV281567.1|EV281567
genomic: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAGgtatttatca ... gcatttacagCACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGCCAG
EST: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAG CACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGGCCAEST: gi|192331414|gb|FK022719.1|FK022719
genomic: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAGgtatttatca ... gcatttacagCACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGG-CCA
EST: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAG CACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGCCAGEST: gi|192331413|gb|FK022718.1|FK022718
genomic: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAGgtatttatca ... gcatttacagCACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGCCAG
EST: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAG CACAATAACTGTGATGACTTCGCTAGTAGCATTGTCAT
genomic: GGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAGgtatttatca ... gcatttacagCACAATAACTGTGATGACTTCGCTAGTAGCATTGTCAT
aaaataaaaattgatattgattactaaccaagcttcacacatattgcatttacagCACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGCCAGTCAGCTGAAGTTTCACTGGGTGGAGCGATATGACAAACTTCTTGTTGGT
tactaac putative branch site (score: 0)
aaaaattgatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattgatgctactttggtttagatgccaattaagtttgcaaaaaaaaataaaaattgatattgattactaaccaagcttcacacatattgcatttacagCACAATAACTGTGATGACTTCGCTAGTAGCATTGTCATTTTATGGGGCCAGTCAGCTGAAGTTTCACTGGGTGGAGCGATATGACAAACTTCTTGTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - tgatgct
- - - - - - - - - - - gatgcca
- - - - - - - - - - - - - - - - - -tttgcaa
- - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacat