1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtttatttgatttgatgcctataatcagggcatgctgaaattgttttattgggaggattagaccgaaatgtgatggttttgtactgacttcatcctttagGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATCATCAAAGAAGAAGTGGTGCA
species | Glycine max |
transcript | GLYMA02G44070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATTTTCTTCAGAATGATTTTCCTGACATGGATGTTATTGGCATTTCTG GAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACEST: gi|208267796|gb|GE071199.1|GE071199
genomic: TGATTTTCTTCAGAATGATTTTCCTGACATGGATGTTATTGGCATTTCTGgtaatttctg ... catcctttagGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGAC
EST: GTTATTGGCATTTCTG GAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACEST: gi|16278257|gb|BI942809.1|BI942809
genomic: GTTATTGGCATTTCTGgtaatttctg ... catcctttagGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGAC
EST: TGATTTTCTTCAGAATGATTTTCCTGACATGGATGTTATTGGCATTTCTG GAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACEST: gi|192301149|gb|FG990159.1|FG990159
genomic: TGATTTTCTTCAGAATGATTTTCCTGACATGGATGTTATTGGCATTTCTGgtaatttctg ... catcctttagGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGAC
EST: TGATTTTCTTCAGAATGATTTTCCTGACATGGATGTTATTGGCATTTCTG GAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGAC
genomic: TGATTTTCTTCAGAATGATTTTCCTGACATGGATGTTATTGGCATTTCTGgtaatttctg ... catcctttagGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGAC
ttattgggaggattagaccgaaatgtgatggttttgtactgacttcatcctttagGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATCATCAAAGAAGAAGTGGTGCA
tactgac putative branch site (score: 1)
cttcatccttt CT-rich tract
ttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatttgatttgatgcctataatcagggcatgctgaaattgttttattgggaggattagaccgaaatgtgatggttttgtactgacttcatcctttagGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATCATCAAAGAAGAAGTGGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - tgatgcc
- - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - gggagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgac