1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgattagtttcttcattttactattggcaatacttttttctccaatatgtcttcctattacccttgataatgaagtgagtgctgtgtgcttcctttgcagAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG
species | Glycine max |
transcript | GLYMA02G43410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAG AGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAEST: gi|9984091|gb|BE658248.1|BE658248
genomic: CCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAGgtatgttctt ... tcctttgcagAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAA
EST: GACAAAACTTNNCNATTTGATGAAGCAATTCAGTTTCTAG AGCAATGTGAGAAGGACAAGGAGCGTNNNNTGGTTCATTGCATGTCAGGAAEST: gi|192311000|gb|FK001609.1|FK001609
genomic: GACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAGgtatgttctt ... tcctttgcagAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAA
EST: CCTTCCAGATGACAAAACTTTGCCACTTGATGAAGCAATTCAGTTTCTAG AGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGEST: gi|13312251|gb|BG405902.1|BG405902
genomic: CCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAGgtatgttctt ... tcctttgcagAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATG
EST: CCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAG AGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAA
genomic: CCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAGgtatgttctt ... tcctttgcagAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAA
tatgtcttcctattacccttgataatgaagtgagtgctgtgtgcttcctttgcagAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG
ccttgat putative branch site (score: 5)
tgcttccttt putative PPT
ttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattagtttcttcattttactattggcaatacttttttctccaatatgtcttcctattacccttgataatgaagtgagtgctgtgtgcttcctttgcagAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - cttcatt
- - - - - - - - - - ctattgg
- - - - - - - - - - - - - - - - - - -ttctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc