1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcactcttggtttttttacaatactcattcagcttctctagtaaaaaggttaaacttatgatgctttactggacactgacattataacttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATATTTTCAGCTCCAAACTATTGTGGTGAATTTGACAATGCTGGTGCGATGA
species | Glycine max |
transcript | GLYMA02G41890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATAEST: gi|22931469|gb|BU548608.1|BU548608
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
EST: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATAEST: gi|14991799|gb|BI317472.1|BI317472
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
EST: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATAEST: gi|207772753|gb|GD743947.1|GD743947
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
EST: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
aaaaggttaaacttatgatgctttactggacactgacattataacttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATATTTTCAGCTCCAAACTATTGTGGTGAATTTGACAATGCTGGTGCGATGA
ttataac putative branch site (score: 2)
cttttat CT-rich tract
attataacttttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactcttggtttttttacaatactcattcagcttctctagtaaaaaggttaaacttatgatgctttactggacactgacattataacttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATATTTTCAGCTCCAAACTATTGTGGTGAATTTGACAATGCTGGTGCGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG