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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtatatattatatgctttggttttgcttttaaggaaagtgtaggtgcatcttctttgatgattctggtgtttttatgtcatggttttgtagATGGTTCCTGATATTAAGTTTGGGCAAAATATAAGAGTTGCTCTTGATGTTGGCTGTGGTGTAGCTAGTTTTGGCGCATACTTGTTGTCTCGAAATGTCA

Basic information

species Glycine max
transcript GLYMA02G41770.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41770.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 3'ss of exon 2
gttggtatatattatatgct--ttggttttgcttttaaggaaagtgtaggtgcatc-ttctttgatgattctggtgtttttatgtcatggttttgtagATGGTTCCTGATATTAAGTTTGGGCAAAATATAAGAGTTGCTCTTGATGTTGGCTGTGGTGTAGCTAGTTTTGGCGCATACTTGTTGTCTCGAAATGTCA
              ||||||  |||   ||   | | | |||| | |       |   |   |     |         | | | || || |  |  ||||||| || ||||||   |||||     | |  |||||||| || |||||||||||||| ||||| |||||||| ||||||||  | || ||  ||||  
-------------gtatgctgattgtacttttatctgatgaaaattttatcatgttgctgactctcagtagcaccacctgtctctc-tgttcatccagATGGTACCAGATATTGCATTTGGCTCTCACACTAGAGTTGCCCTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATACTTACTTTCACGTGATGTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287979|gb|BI471870.1|BI471870
EST:     GTACGCAATTTATACATGGAGCAGATCAATACTTGGACCATATTTCTGAG                         ATGGTTCCTGATATTAAGTTTGGGCAAAATATAAGAGTTGCTCTTGATGTT
genomic: GTACGCAATTTATACATGGAGCAGATCAATACTTGGACCATATTTCTGAGgttggtatat ... ggttttgtagATGGTTCCTGATATTAAGTTTGGGCAAAATATAAGAGTTGCTCTTGATGTT
EST: gi|51336385|gb|CO980251.1|CO980251
EST:     GTACGCAATTTATACATGGAGCAGATCAATACTTGGACCATATTTCTGAG                         ATGGTTCCTGATATTAAGTTTGGGCAAAATATAAGAGTTGCTATTGATGTT
genomic: GTACGCAATTTATACATGGAGCAGATCAATACTTGGACCATATTTCTGAGgttggtatat ... ggttttgtagATGGTTCCTGATATTAAGTTTGGGCAAAATATAAGAGTTGCTCTTGATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtaggtgcatcttctttgatgattctggtgtttttatgtcatggttttgtagATGGTTCCTGATATTAAGTTTGGGCAAAATATAAGAGTTGCTCTTGATGTTGGCTGTGGTGTAGCTAGTTTTGGCGCATACTTGTTGTCTCGAAATGTCA
                ctttgat  putative branch site (score: 5)
                               tgtttttat  TA-rich tract