1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attctattttattttattttataaatcagaaatcatagttaaagtttctctttgaaattcatgctccacaagagtctaatgctttgtgcaacatgaacagGTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAAGGAAAATAATGTAAACAATGAAGGGATGCGTTTTGACCCTGGTGCACGAACTGCTT
species | Glycine max |
transcript | GLYMA02G41320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGTAGGCATATCCAGATTAGGAGGTTCATCAGCTTTTATTGGAAAG GTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAAGGAAAATEST: gi|6454289|gb|AW184972.1|AW184972
genomic: TTGCAGTAGGCATATCCAGATTAGGAGGTTCATCAGCTTTTATTGGAAAGgtgttgtata ... acatgaacagGTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAAGGAAAAT
EST: TTGCAGTAGGCATATCCAGATTAGGAGGTTCATCAGCTTTTATTGGAAAG GTTGGTGAGGATGAATNTGGATATATGCTTGCCAATATACTCAANGGAAA-EST: gi|151410272|gb|EV280087.1|EV280087
genomic: TTGCAGTAGGCATATCCAGATTAGGAGGTTCATCAGCTTTTATTGGAAAGgtgttgtata ... acatgaacagGTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAA-GGAAAA
EST: TTGCAGTAGGCATATCCAGATTAGGAGGTTCATCAGCTTTTATTGGAAAG GTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAAGGAAAAT
genomic: TTGCAGTAGGCATATCCAGATTAGGAGGTTCATCAGCTTTTATTGGAAAGgtgttgtata ... acatgaacagGTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAAGGAAAAT
ttctctttgaaattcatgctccacaagagtctaatgctttgtgcaacatgaacagGTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAAGGAAAATAATGTAAACAATGAAGGGATGCGTTTTGACCCTGGTGCACGAACTGCTT
gtctaat putative branch site (score: 3)
tttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctattttattttattttataaatcagaaatcatagttaaagtttctctttgaaattcatgctccacaagagtctaatgctttgtgcaacatgaacagGTTGGTGAGGATGAATTTGGATATATGCTTGCCAATATACTCAAGGAAAATAATGTAAACAATGAAGGGATGCGTTTTGACCCTGGTGCACGAACTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc