1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagctttctcttatccttcctcatgcgaggatatcaaattttgattacatttggtttgtggcatggttttgagtccaattaacatgggattctgtctttcagGAACTCTCCTAATGACTCCCGAAAGGCGAAGAGCTATCTGGGCAATATATG
species | Glycine max |
transcript | GLYMA02G40720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACATTTTACCTGG GAACTCCCCTAATGACTCCCGAAAGGCGAAGAGCTATCTGGGCA-TATATGEST: gi|193654519|gb|FK597829.1|FK597829
genomic: AAACATTTTACCTGGgttagctttc ... tgtctttcagGAACTCTCCTAATGACTCCCGAAAGGCGAAGAGCTATCTGGGCAATATATG
EST: TGACCGTTGTGGAGAAATTTGTGCTGAATATGCGAAAACATTTTACCTGG GAACTCTCCTAATGACTCCCGAAAGGCGAAGAGCTATCTGGGCAA
genomic: TGACCGTTGTGGAGAAATTTGTGCTGAATATGCGAAAACATTTTACCTGGgttagctttc ... tgtctttcagGAACTCTCCTAATGACTCCCGAAAGGCGAAGAGCTATCTGGGCAA
catttggtttgtggcatggttttgagtccaattaacatgggattctgtctttcagGAACTCTCCTAATGACTCCCGAAAGGCGAAGAGCTATCTGGGCAATATATG
aattaac putative branch site (score: 2)
ttctgtctttc putative PPT
aattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctttctcttatccttcctcatgcgaggatatcaaattttgattacatttggtttgtggcatggttttgagtccaattaacatgggattctgtctttcagGAACTCTCCTAATGACTCCCGAAAGGCGAAGAGCTATCTGGGCAATATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT