1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgatggtcttttgttgcatatttcggtcaccaacctccttgccactttagtatgttgtatcagtatcatcttctgatgccctaatttgtaaatcacagATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAGATTACAATTGTAGATCCTGCTGATGACCCTGTGGAGAAATTGGCTGAGAAGACAGAAA
species | Glycine max |
transcript | GLYMA02G40310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATCATGGCCGACGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA ATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAEST: gi|207745381|gb|GD713999.1|GD713999
genomic: CAATCATGGCCGACGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcgt ... taaatcacagATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGA
EST: CAATCATGGCCGACGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA ATTGTTCCTTTTGATCCTACCAAGAAEST: gi|298191218|gb|HO038697.1|HO038697
genomic: CAATCATGGCCGACGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcgt ... taaatcacagATTGTTCCTTTTGATCCTACCAAGAA
EST: CAATCATGGCCGACGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA ATTGTTCCTTTTGATCCTA
genomic: CAATCATGGCCGACGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcgt ... taaatcacagATTGTTCCTTTTGATCCTA
actttagtatgttgtatcagtatcatcttctgatgccctaatttgtaaatcacagATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAGATTACAATTGTAGATCCTGCTGATGACCCTGTGGAGAAATTGGCTGAGAAGACAGAAA
ccctaat putative branch site (score: 3)
taatttgtaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatggtcttttgttgcatatttcggtcaccaacctccttgccactttagtatgttgtatcagtatcatcttctgatgccctaatttgtaaatcacagATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAGATTACAATTGTAGATCCTGCTGATGACCCTGTGGAGAAATTGGCTGAGAAGACAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-atgatgg
- - - - - - - - tgcatat
- - - - - - - - - - - - - - tcaccaa
- - - - - - - - - - - - - - - - - -cctcctt
- - - - - - - - - - - - - - - - - - - - - gccactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgccc