1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caaactcttgcatccagatacatccccagtgggggtggtcttttgatatttttctgtccatcagtgtataaagtatacaatgtgaatattcaacttgcagGAATTTAAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAATTGGAAAGCTGACTCACATAAAATCAAT
species | Glycine max |
transcript | GLYMA02G39470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCTCGTGGTTCGGTGTGGAGTGTTTTCATGGTTATGTTGTGACCTT GAATTTAAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAATTGGAAA
genomic: CCTTGCTCGTGGTTCGGTGTGGAGTGTTTTCATGGTTATGTTGTGACCTTgtaagtaatt ... caacttgcagGAATTTAAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAATTGGAAA
atatttttctgtccatcagtgtataaagtatacaatgtgaatattcaacttgcagGAATTTAAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAATTGGAAAGCTGACTCACATAAAATCAAT
ttttgat putative branch site (score: 4)
tataaagtatacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaactcttgcatccagatacatccccagtgggggtggtcttttgatatttttctgtccatcagtgtataaagtatacaatgtgaatattcaacttgcagGAATTTAAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAATTGGAAAGCTGACTCACATAAAATCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
caaactc
- - - - -gcatcca
- - - - - - - - - - catcccc
- - - - - - - - - - - - - - - - gggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtg