1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactgtactgtaatcaaactagctttgctaatggctactatctaccttaccgtgtgtgcttgggcctgggcctgggcctgggctcgggctcgggctctgatagtgtgttgttgttttgactgatgcatgatgcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
species | Glycine max |
transcript | GLYMA02G36960.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAG CCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTEST: gi|193687543|gb|FK634004.1|FK634004
genomic: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGgtactgtact ... gcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
EST: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAG CCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTEST: gi|15284959|gb|BI468850.1|BI468850
genomic: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGgtactgtact ... gcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
EST: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAG CCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTEST: gi|207690947|gb|GD671569.1|GD671569
genomic: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGgtactgtact ... gcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
EST: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAG CCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTEST: gi|6724382|gb|AW308781.1|AW308781
genomic: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGgtactgtact ... gcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
EST: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAG CCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
genomic: AGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGgtactgtact ... gcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
ggctcgggctctgatagtgtgttgttgttttgactgatgcatgatgcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
gactgat putative branch site (score: 3)
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtactgtaatcaaactagctttgctaatggctactatctaccttaccgtgtgtgcttgggcctgggcctgggcctgggctcgggctcgggctctgatagtgtgttgttgttttgactgatgcatgatgcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT