1 5' 3' | 2 5' 3' | 3 5' 3' |
...atcttttaataatgtacttgctttcattttttttatagttaaaaaagtctgtttgcagatcctataattgtgttcttttcatttatcttttctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGA
species | Glycine max |
transcript | GLYMA02G35990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|254349094|gb|GR860366.1|GR860366
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|4307444|gb|AI444048.1|AI444048
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|21675327|gb|BQ627688.1|BQ627688
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|22932167|gb|BU549306.1|BU549306
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: TGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|27426798|gb|CA938318.1|CA938318
genomic: TGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|19348365|gb|BM892897.1|BM892897
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|58018614|gb|CX705356.1|CX705356
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|254316764|gb|GR828301.1|GR828301
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|192315990|gb|FK007109.1|FK007109
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|27425018|gb|CA936538.1|CA936538
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|12688734|gb|BG155070.1|BG155070
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|254327956|gb|GR834921.1|GR834921
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|15813071|gb|BI785346.1|BI785346
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|13480511|gb|BG509854.1|BG509854
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|21994159|gb|BQ785687.1|BQ785687
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|14258514|gb|BG881422.1|BG881422
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|4396099|gb|AI495096.1|AI495096
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|58024425|gb|CX711166.1|CX711166
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|31460525|gb|CD402493.1|CD402493
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|12497027|gb|BG047360.1|BG047360
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|6455149|gb|AW185832.1|AW185832
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|16341891|gb|BI967486.1|BI967486
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|15286664|gb|BI470555.1|BI470555
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|254349093|gb|GR860365.1|GR860365
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|15286444|gb|BI470343.1|BI470343
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|6341954|gb|AW164778.1|AW164778
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|21286090|gb|BQ473961.1|BQ473961
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|15814040|gb|BI786315.1|BI786315
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|10231472|gb|BE800360.1|BE800360
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|254329680|gb|GR839233.1|GR839233
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|254343063|gb|GR859225.1|GR859225
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|23725959|gb|BU760954.1|BU760954
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|193437905|gb|FK399194.1|FK399194
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|12773143|gb|BG238070.1|BG238070
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|254327955|gb|GR834920.1|GR834920
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|192327019|gb|FK015201.1|FK015201
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAAEST: gi|254316765|gb|GR828302.1|GR828302
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAA
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|192315989|gb|FK007108.1|FK007108
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|9258943|gb|BE347090.1|BE347090
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|58018289|gb|CX705031.1|CX705031
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACEST: gi|213611874|gb|DB958912.1|DB958912
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
agtctgtttgcagatcctataattgtgttcttttcatttatcttttctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGA
ttgtgttcttttcatt CT-rich tract
ttttcatttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttttaataatgtacttgctttcattttttttatagttaaaaaagtctgtttgcagatcctataattgtgttcttttcatttatcttttctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGA
- - - - - aatgtac
- - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc