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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattatttggagtaattttttttccttttttatttcttttgggatgtgattggaaactatgaaagcttaactaacttatgctaagttttctttttttcagTGTGAACAAGTAACAAAGCAAGAGAAAATTATCTCCGATGGCGACATATTTTCATAGTAACTCCGAAATTCAAGCCGGCGCTGACGGCCTTCAAACTCTC

Basic information

species Glycine max
transcript GLYMA02G35450.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593842|gb|DB957962.1|DB957962
EST:     GATGGGTTGATCAAAAATCGCTCTCCAAACCAGATTCGTAACACTGAAAG                         TGTGAACAAGTAACAAAGCAAGAGAAAATTATCTCCGATGGCGACATATTT
genomic: GATGGGTTGATCAAAAATCGCTCTCCAAACCAGATTCGTAACACTGAAAGgtacagctac ... tttttttcagTGTGAACAAGTAACAAAGCAAGAGAAAATTATCTCCGATGGCGACATATTT
EST: gi|213593004|gb|DB969858.1|DB969858
EST:     GATGGGTTGATCAAAAATCGCTCTCCAAACCAGATTCGTAACACTGAAAG                         TGTGAACAAGTAACAAAGCAAGAGAAAATTATCTCCGATGGCGACATATTT
genomic: GATGGGTTGATCAAAAATCGCTCTCCAAACCAGATTCGTAACACTGAAAGgtacagctac ... tttttttcagTGTGAACAAGTAACAAAGCAAGAGAAAATTATCTCCGATGGCGACATATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgattggaaactatgaaagcttaactaacttatgctaagttttctttttttcagTGTGAACAAGTAACAAAGCAAGAGAAAATTATCTCCGATGGCGACATATTTTCATAGTAACTCCGAAATTCAAGCCGGCGCTGACGGCCTTCAAACTCTC
                       aactaac  putative branch site (score: 1)
                                        ttttctttttttc  putative PPT
                                    taagttttcttttttt  TA-rich tract