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gtaagttatgtgtatggtaaatctgagtatttagttcaactctaatatcttgtaactgatatcaatagaagaaaggagcactttgtgaattatttttggttttgcagTGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATCTGTTTCATGACATTGCTAGGATTTGTTGACGATGTCCTTGATGTCCCATGGAGAGT
species | Glycine max |
transcript | GLYMA02G34640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAAT TGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATCTGTTTCATGACATTGEST: gi|7233872|gb|AW569214.1|AW569214
genomic: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAATgtaagttatg ... ggttttgcagTGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATCTGTTTCATGACATTG
EST: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAAT TGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATGCTGTT-CATGACATTEST: gi|208293340|gb|GE090304.1|GE090304
genomic: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAATgtaagttatg ... ggttttgcagTGGCTTGTTGAATACAATGCAGCGCTAGCGTGCAT-CTGTTTCATGACATT
EST: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAAT TGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATGCTGTT-CATGACATTEST: gi|15815084|gb|BI787359.1|BI787359
genomic: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAATgtaagttatg ... ggttttgcagTGGCTTGTTGAATACAATGCAGCGCTAGCGTGCAT-CTGTTTCATGACATT
EST: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAAT TGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATCTGTTTCATGACATTG
genomic: TGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAATgtaagttatg ... ggttttgcagTGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATCTGTTTCATGACATTG
taactgatatcaatagaagaaaggagcactttgtgaattatttttggttttgcagTGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATCTGTTTCATGACATTGCTAGGATTTGTTGACGATGTCCTTGATGTCCCATGGAGAGT
tttgtgaattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttatgtgtatggtaaatctgagtatttagttcaactctaatatcttgtaactgatatcaatagaagaaaggagcactttgtgaattatttttggttttgcagTGGCTTGTTGAATACAATGCAGCGCTAGCGTGCATCTGTTTCATGACATTGCTAGGATTTGTTGACGATGTCCTTGATGTCCCATGGAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA