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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcttaattgaggtgattgcatcccccttaaggcatttttgcctctccttgaaattcgctttttaagagcttttatgtgttatggctagATTTTCAATGCTCTGAATTCATTGGAATTGAAGTCACTAGAAGAGCCACTCTACCTTTTTGGACAGTTTTTTCGGAGGCCGCTTGAATGCTTGACCCTAG

Basic information

species Glycine max
transcript GLYMA02G34060.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtcttaattgaggtgattgcatcccccttaaggcatttttgcctctccttgaaattcgctttttaagagcttttatgtgttatggctagATTTTCAATGCTCTGAATTCATTGGAATTGAAGTCACTAGAAGAGCCACTCTACCTTTTTGGACAGTTTTTTCGGAGGCCGCTTGAATGCTTGACCCTAG
    |||| |  |||  | |||  |    | || | |  | ||  |           ||     ||  ||   |||   |||| | ||   |||| |||||  |  |||| ||  ||||| | |||||||||||||||||  ||||||||||||||||||| |||| || |||||||||||||||||| || |
----gtctcatgtgatttaatttga----cttttacgagtgttcact---------gatatatattacaacttcttaactgtggtttgaacagATCTTCAACTCATTGAACTCCCTGGAACTAAAGTCACTAGAAGAGCCTATCTACCTTTTTGGACAGTTCTTTCAGAAGCCGCTTGAATGCTTGACACTCG

upper sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 2
gtttgtcttaattgaggtgattgcatcccccttaaggcatttttgcctctccttgaaattcgctttttaagagcttttatgtgttatggctagATTTTCAATGCTCTGAATTCATTGGAATTGAAGTCACTAGAAGAGCCACTCTACCTTTTTGGACAGTTTTTTCGGAGGCCGCTTGAATGCTTGACCCTAG
|| ||| || |||||||||| |  |||  | |   ||||||||||||||| |||| ||||    | ||||||  ||  || |||  ||  ||||| |||||||| || || |||||||||||||||||||| || |||||| |||||||||| |||||||| |||| || ||| |||||||||||||| || |
gtctgttttgattgaggtgactcaatcttcttctgggcatttttgcctctacttgtaatttttatcttaagaatttgcatatgtattgagtagATCTTCAATGCCCTAAACTCATTGGAATTGAAGTCACTTGAGGAGCCAATCTACCTTTTCGGACAGTTCTTTCAGAAGCCTCTTGAATGCTTGACACTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgcctctccttgaaattcgctttttaagagcttttatgtgttatggctagATTTTCAATGCTCTGAATTCATTGGAATTGAAGTCACTAGAAGAGCCACTCTACCTTTTTGGACAGTTTTTTCGGAGGCCGCTTGAATGCTTGACCCTAG
                         tttttaaga  TA-rich tract