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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcttctgtggtggcatcggttcaatgttcctggttgttttgatttgaattattattatctgtgaaggcctttgttgtaattcaacatgtctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG

Basic information

species Glycine max
transcript GLYMA02G33320.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193311596|gb|FK278082.1|FK278082
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193472539|gb|FK434924.1|FK434924
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193547133|gb|FK502428.1|FK502428
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193340282|gb|FK305789.1|FK305789
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACGTTGAAGAAG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACGTTGAAGAAG
EST: gi|193370158|gb|FK336734.1|FK336734
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193721750|gb|FK658234.1|FK658234
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaattattattatctgtgaaggcctttgttgtaattcaacatgtctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
                                             tctgttcc  CT-rich tract
     ttattattatctgt  TA-rich tract