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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcttctgtggtggcatcggttcaatgttcctggttgttttgatttgaattattattatctgtgaaggcctttgttgtaattcaacatgtctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG

Basic information

species Glycine max
transcript GLYMA02G33320.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600861|gb|DB968825.1|DB968825
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193311596|gb|FK278082.1|FK278082
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|213590361|gb|DB971523.1|DB971523
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|31561930|gb|CD487768.1|CD487768
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209710522|gb|BW662058.1|BW662058
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|7639460|gb|AW733782.1|AW733782
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193472539|gb|FK434924.1|FK434924
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|192334661|gb|FK025880.1|FK025880
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|10255267|gb|BE823033.1|BE823033
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193547133|gb|FK502428.1|FK502428
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|17023100|gb|BM094134.1|BM094134
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|46492865|gb|CN472421.1|CN472421
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|192334662|gb|FK025881.1|FK025881
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|214006081|gb|DB986005.1|DB986005
EST:     TCAG-CAGCGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: GCAGCCA-CGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|298170437|gb|HO019061.1|HO019061
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193340282|gb|FK305789.1|FK305789
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACGTTGAAGAAG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACGTTGAAGAAG
EST: gi|192314746|gb|FK005986.1|FK005986
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209713426|gb|BW679241.1|BW679241
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193370158|gb|FK336734.1|FK336734
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209703490|gb|BW683351.1|BW683351
EST:     GCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: GCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209722595|gb|BW679844.1|BW679844
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|192314745|gb|FK005985.1|FK005985
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209706732|gb|BW676046.1|BW676046
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193721750|gb|FK658234.1|FK658234
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209703489|gb|BW683350.1|BW683350
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209706733|gb|BW676047.1|BW676047
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209722594|gb|BW679843.1|BW679843
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|6915982|gb|AW397512.1|AW397512
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACGgtaagtaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaattattattatctgtgaaggcctttgttgtaattcaacatgtctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
                                             tctgttcc  CT-rich tract
     ttattattatctgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgcttctgtggtggcatcggttcaatgttcctggttgttttgatttgaattattattatctgtgaaggcctttgttgtaattcaacatgtctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG

ttgcttc
- - - -tgtggtg
- - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacatg