1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttttttgtctagtgtttcctgttgtcctctaattgatttattaaagttatagatgtttgcggttgtaattgatcatcttttacagGAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTTGGGGATGAAGAAAAACGGGCTGTTTATGATCAGACTGGTTGTGTTGATGATG
species | Glycine max |
transcript | GLYMA02G31080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCTGGTGATGAG GAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATTGCTATTCTTGGGEST: gi|208165652|gb|GD959440.1|GD959440
genomic: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAGgttttttgtc ... tcttttacagGAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTTGGG
EST: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAG GAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTTGGGEST: gi|208273634|gb|GE069254.1|GE069254
genomic: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAGgttttttgtc ... tcttttacagGAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTTGGG
EST: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAG GAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTAGGGEST: gi|208275938|gb|GE074288.1|GE074288
genomic: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAGgttttttgtc ... tcttttacagGAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTTGGG
EST: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAG GAAGCTAAAGCAAAGTTTCAGCEST: gi|208097573|gb|GD891320.1|GD891320
genomic: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAGgttttttgtc ... tcttttacagGAAGCTAAAGCAAAGTTTCAGC
EST: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAG GAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTA
genomic: ACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCCGGCGATGAGgttttttgtc ... tcttttacagGAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTA
aattgatttattaaagttatagatgtttgcggttgtaattgatcatcttttacagGAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTTGGGGATGAAGAAAAACGGGCTGTTTATGATCAGACTGGTTGTGTTGATGATG
tcatctttt CT-rich tract
atttattaaagttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttgtctagtgtttcctgttgtcctctaattgatttattaaagttatagatgtttgcggttgtaattgatcatcttttacagGAAGCTAAAGCAAAGTTTCAGCAATTGCAAAACGTTATCGCTATTCTTGGGGATGAAGAAAAACGGGCTGTTTATGATCAGACTGGTTGTGTTGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT