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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaacttcataacttgctaggaactgtttcttgcaccttcatcccaagcatacttgtctgaagttcattttctctttgtatttacagTGCTTTGGTGGCAAGAGCATTGATTGAGAACACCAATTTGATAAAGTGGTCTCTTTTTTTCAAAGCTTTCTGTGGTCTTTTTGCTCTGATTTGTGGGAAT

Basic information

species Glycine max
transcript GLYMA02G26820.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26820.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g07200.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtaa----cttcataactt---gctaggaactgtttcttgcacct----------tcatcccaagcatacttgtctgaagttcattttctctttgtatttacagTGCTTTGGTGGCAAGAGCATTGATTGAGAACACCAATTTGATAAAGTGGTCTCTTTTTTTCAAAGCTTTCTGTGGTCTTTTTGCTCTGATTTGTGGGAAT
|| |||||    | |  |||  |   | ||  ||  |||| |||  |||          | || || || || |||| ||   |||||| || ||||  | || ||||||||||||| ||||| ||||||||||||||| | ||| |||||||||||||  | || ||||| || || | ||||||| ||||||| || ||||| |||
gtaagtaataatcatgctaatcttgagttattaatggtttattgatcctgatcccaagattatgcctagaattcttgacttcggttcatcttttcttctt-ttgacagTGCTTTGGTAGCAAGGGCATTGATTGAGAACCCAAATCTGATAAAGTGGTCATTGTTGTTCAAGGCATTTTCTGGTCTTCTTGCTCTTATATGTGGAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208306514|gb|GE104453.1|GE104453
EST:     GGAGATTTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATT                         TGCTTTGGTGGCAAGAGCATTGAT
genomic: GGAGATTTTT-AAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTgtgagtaact ... gtatttacagTGCTTTGGTGGCAAGAGCATTGAT
EST: gi|4307276|gb|AI444024.1|AI444024
EST:     TGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATT                         TTGCTT-GGTGGCA
genomic: TGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTgtgagtaact ... gtatttacagT-GCTTTGGTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaccttcatcccaagcatacttgtctgaagttcattttctctttgtatttacagTGCTTTGGTGGCAAGAGCATTGATTGAGAACACCAATTTGATAAAGTGGTCTCTTTTTTTCAAAGCTTTCTGTGGTCTTTTTGCTCTGATTTGTGGGAAT
                               ttcattttctctttgt  CT-rich tract
                                          tttgtattta  TA-rich tract