1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggatgagcagaatgtttatgtagataactagtttttcattccatcatattgctaaagtgtataagtatgaattgactcagttgagtcaaatgttgcttagGTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAG
species | Glycine max |
transcript | GLYMA02G17250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGATATGGTGACAGGTGTCGTTTCAATCACCCTCGCGATCGTGCTGCG GTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAAEST: gi|4313837|gb|AI460956.1|AI460956
genomic: GTGGATATGGTGACAGGTGTCGTTTCAATCACCCTCGCGATCGTGCTGCGgtaacacttt ... tgttgcttagGTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAA
EST: ACAGTGTGTCGTTTCAATCACCCTCGCGATCGTGCTGCG GTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAA
genomic: ACAG-GTGTCGTTTCAATCACCCTCGCGATCGTGCTGCGgtaacacttt ... tgttgcttagGTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAA
atattgctaaagtgtataagtatgaattgactcagttgagtcaaatgttgcttagGTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAG
tataagtatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgagcagaatgtttatgtagataactagtttttcattccatcatattgctaaagtgtataagtatgaattgactcagttgagtcaaatgttgcttagGTTGCTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - tatgtag
- - - - - - - - - - - - - - - - - - - - ccatcat