1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attctaaggtactgaatcctgtttggcagccatctgtgtggtcaatggtgttcaaactgtttatatattattatcatatctccaaacttttctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCATAGACATTCCTGTGAAGAAGTTTTCATTGTTCTCAAAGGGAGTGGCACTC
species | Glycine max |
transcript | GLYMA02G16890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAG GTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCATEST: gi|298186689|gb|HO037322.1|HO037322
genomic: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAGgtatccaact ... tctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCAT
EST: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAG GTTGAAGTATGGCTTCAAACATTTACACCAGGAACACACACCCCAATTCATEST: gi|298199291|gb|HO042654.1|HO042654
genomic: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAGgtatccaact ... tctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCAT
EST: GCCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAG GTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCATEST: gi|298168149|gb|HO013412.1|HO013412
genomic: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAGgtatccaact ... tctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCAT
EST: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAG GTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCATEST: gi|298196965|gb|HO041708.1|HO041708
genomic: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAGgtatccaact ... tctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCAT
EST: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAG GTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCAT
genomic: GTCTCTCTCACATGACTGTTGCAGGTTCATTGTTGCATGGAATGAAAGAGgtatccaact ... tctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCAT
tggtgttcaaactgtttatatattattatcatatctccaaacttttctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCATAGACATTCCTGTGAAGAAGTTTTCATTGTTCTCAAAGGGAGTGGCACTC
cttttct CT-rich tract
ttcaaactgtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctaaggtactgaatcctgtttggcagccatctgtgtggtcaatggtgttcaaactgtttatatattattatcatatctccaaacttttctggaacagGTTGAAGTATGGCTTCAAACATTTTCACCAGGAACACACACCCCAATTCATAGACATTCCTGTGAAGAAGTTTTCATTGTTCTCAAAGGGAGTGGCACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - -cctgttt
- - - - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - -aatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - -tcaaact