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...atatgttctttcattgcactagagtctactacttgataatttgtgatacagtctatgtggttatggtttctgatcatgcttgggattccttacttttcagCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGG
species | Glycine max |
transcript | GLYMA02G16860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAG CTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAEST: gi|192334194|gb|FK026575.1|FK026575
genomic: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAGgtttgtgtct ... tacttttcagCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAA
EST: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAG CTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAEST: gi|208095582|gb|GD896246.1|GD896246
genomic: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAGgtttgtgtct ... tacttttcagCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAA
EST: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAG CTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAEST: gi|298179338|gb|HO027809.1|HO027809
genomic: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAGgtttgtgtct ... tacttttcagCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAA
EST: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAG CTCAACTATTAGATGCAGAAATATCACCCTTGATTGTTACAATTTCTGGAA
genomic: TGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAGgtttgtgtct ... tacttttcagCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAA
atacagtctatgtggttatggtttctgatcatgcttgggattccttacttttcagCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGG
tccttac putative branch site (score: 2)
ttccttacttttc CT-rich tract
ttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgttctttcattgcactagagtctactacttgataatttgtgatacagtctatgtggttatggtttctgatcatgcttgggattccttacttttcagCTCAACTATTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - tgcacta
- - - - - - - - - - - - - - ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - gtctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct