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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttttcatttactaactcaactttcttctagtgtttcctagttcctttcttgatgaccaaaaaaagaaaagggaagagaaaaaaatagacttctattcttctccttctgtggctaactgaactcatactcttgaaataaaatataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG

Basic information

species Glycine max
transcript GLYMA02G16800.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38192369|gb|CF921575.1|CF921575
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|38193656|gb|CF922862.1|CF922862
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|192331125|gb|FK020345.1|FK020345
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|38193508|gb|CF922714.1|CF922714
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|38192642|gb|CF921848.1|CF921848
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|38193765|gb|CF922971.1|CF922971
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|151408599|gb|EV278407.1|EV278407
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|7925827|gb|AW831853.1|AW831853
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|16344874|gb|BI970469.1|BI970469
EST:     TAATGTCGCTTCAAAATG                         TGGANNNGCGGATGCCAATTACANNNNGTTAACTCAGCTTTACTCCACGTA
genomic: TAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|38192866|gb|CF922072.1|CF922072
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
EST: gi|38192483|gb|CF921689.1|CF921689
EST:     AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATG                         TGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA
genomic: AACGCCTACAGGGGGAAAGTTCTTCTTGTAATTAATGTCGCTTCAAAATGgtagttttca ... tataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctccttctgtggctaactgaactcatactcttgaaataaaatataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG
              ggctaac  putative branch site (score: 2)
                            atactcttgaaataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagttttcatttactaactcaactttcttctagtgtttcctagttcctttcttgatgaccaaaaaaagaaaagggaagagaaaaaaatagacttctattcttctccttctgtggctaactgaactcatactcttgaaataaaatataaaacagTGGATTTGCGGATGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG