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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtatcttttatggctactagattttacccttattacctaaattttagaattgttttggtgtaatgttggttgaaaggtttaacgagatatgtttttttgttagGGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAG

Basic information

species Glycine max
transcript GLYMA02G16130.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgtatcttttatggctactagattttacccttattacctaaattttagaattgttttggtgtaatgttggttgaaag-gtttaacgagatatgtttttttgttagGGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAG
                   |   | ||| |     |||      | |    ||   ||  | |  || |  |  | |  |  |  | | || |     ||  | ||| ||||||||||| ||||||||||| ||||| |||||||
------------------gtgcttcttatctcatatactcgggctctgcggtttacttactttt-tgctactcaacattgacttccaatattttcaaattcatcagGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAG

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 3
--------------------gtgtatcttttatggct--actagattttacccttattacctaaatt------ttagaattgttttggtgtaat---gttggttgaaagg----tttaacgagat----atgtttttttgttagGGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAG
                      |  ||||||   | |    |   | ||   ||| || | |  | |      ||   | |||||     |||    |||||    |  |    | ||||   |     || || |||||  ||| ||||| || |||||||||||||||||||| |||||||
gtgcagcatttactactgtcaagactcttttcccgttcggttttctcttcttcttctttcatggaatgggtgattgtgaatgtttcaacataacttggttggcctcagtgattttctaactgaactttaatattcttttgc-agGATTTGGCGTGGGGCACATGCGTGACACCAAAACAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttttggtgtaatgttggttgaaaggtttaacgagatatgtttttttgttagGGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAG
                            gtttaac  putative branch site (score: 3)
                                           tttttttgtt  putative PPT
                                      atatgtttttttgtta  TA-rich tract