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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatgatgttctggatccatttccaagtagttaatggctttctagatattaattaaaagataagtttttgcttttattttatggtgataatgcttttggaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAACACATTTTAGTTGCAGTTGGAGGTCGCCCCTTCATTCCTGATATCCCTG

Basic information

species Glycine max
transcript GLYMA02G16010.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396456|gb|EV266333.1|EV266333
EST:     GGGGTCAAGCTGATTGAAGGCCATGGAAAG                         ATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
genomic: GGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
EST: gi|207711610|gb|GD692658.1|GD692658
EST:     AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAG                         ATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATT
genomic: AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATT
EST: gi|16106218|gb|BI893958.1|BI893958
EST:     AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAG                         ATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
genomic: AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
EST: gi|15285091|gb|BI468982.1|BI468982
EST:     AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAA-G                         N
genomic: AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcag-
EST: gi|15285091|gb|BI468982.1|BI468982
EST:     AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAA-G                         N
genomic: AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcag-
EST: gi|193604041|gb|FK555492.1|FK555492
EST:     CTGGGGTCAAGCTGATTGAAGGCCATGGAAAG                         ATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
genomic: CTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
EST: gi|10235222|gb|BE804169.1|BE804169
EST:     AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAG                         ATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
genomic: AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
EST: gi|17022528|gb|BM093562.1|BM093562
EST:     AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAG                         ATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
genomic: AGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
EST: gi|254323695|gb|GR836034.1|GR836034
EST:     ATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAG                         ATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA
genomic: ATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGgtaggatgat ... gaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaagataagtttttgcttttattttatggtgataatgcttttggaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAACACATTTTAGTTGCAGTTGGAGGTCGCCCCTTCATTCCTGATATCCCTG
      ataagtttttgctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggatgatgttctggatccatttccaagtagttaatggctttctagatattaattaaaagataagtttttgcttttattttatggtgataatgcttttggaacctgcagATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAACACATTTTAGTTGCAGTTGGAGGTCGCCCCTTCATTCCTGATATCCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG