1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtttagtgctcatttttgtggtagtgatccctcttctcctgtaactctttgtagcaagaaaataatctgttttttttttttgttttttcttttctgacagAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAG
species | Glycine max |
transcript | GLYMA02G15250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGG AAACAAGATTACAAAATGGCTCTAAG-AAGTATCGGAEST: gi|7233363|gb|AW568710.1|AW568710
genomic: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGGgtattggtgc ... tttctgacagAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGA
EST: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGG AAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACEST: gi|57575694|gb|CX548669.1|CX548669
genomic: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGGgtattggtgc ... tttctgacagAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTAC
EST: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGG AAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACEST: gi|11412607|gb|BF424618.1|BF424618
genomic: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGGgtattggtgc ... tttctgacagAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTAC
EST: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGG AAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTNTACGCTAC
genomic: GGATGAAATCTGTTGACTCGATTAAAGCTTTTGGCAATGATTATTACAGGgtattggtgc ... tttctgacagAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTAC
tctttgtagcaagaaaataatctgttttttttttttgttttttcttttctgacagAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAG
taatctgttttttttt CT-rich tract
aagaaaataatctgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttagtgctcatttttgtggtagtgatccctcttctcctgtaactctttgtagcaagaaaataatctgttttttttttttgttttttcttttctgacagAAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA