Sequence
atgc intronic sequence ATGC exonic sequence...tatattcatgttttattatgaaatttaaacactggctaacagttttaagttaggacaccaatgaccaatctcttgtgaactctgttattcctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTC
Basic information
species | Glycine max |
transcript | GLYMA02G14110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G147430_T02 (Zea mays), 3'ss of exon 2
-----tatattcatgttttattatgaaatttaaacactggctaacagttttaagttaggacaccaatgaccaatctcttgtgaactctgttattcctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTC
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gttagtatcagagtgctctattattacaaactg-cattctctaa-ggttataatgtttcctaccagagaaattgatattttcacctcttaaaac---ttgcccagATCCACGTCTGACAGACTATGACACACTGCTGGAAAATATACATGGTCTGAAGGAAGGAAGGTCAGTTCAGGTTCCAATATATGATTTCAAGTCAAGCTG
upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 3'ss of exon 2
-----tatattcatgttt-----tattatgaaatttaaacactggctaacagttttaagttaggacaccaatgaccaatctcttgtgaactctgttattcctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTC
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gtaagaattttcatcttgataggtcccatgaggaatgaagtccta-tgaca-cattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttagATCCACGGTTAACGGACTATGACACATTGCTCAAGAATCTTGAAGACTTAAAGGAAGGAAAGCAGGTTGAGGTTCCTATTTATGATTTTAAGTCCAGCTC
upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 3'ss of exon 1
tatattcatgttttattatgaaatttaaacactggctaacagttttaagttaggacacca-atgaccaatctcttgtgaactctgttattcctttgtg--cagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTC
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---aatagtgagccattcatcaaaatagttaatgatttaaatttaaatcatagcacatggtgtgactctactggtcctaatatgatttttcttctaaaaccagATCCCCGTTTGACAGACTATGATACATTGCTCCAGAATGTCCATGATCTGAAGGCTGGAAAGCAGGTTCAGATTCCAATTTATGATTTCAAGTCTAGCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209718631|gb|BW674744.1|BW674744EST: AATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATG ATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAA
genomic: AATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatc ... ctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagttaggacaccaatgaccaatctcttgtgaactctgttattcctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTC
ctctgttattccttt CT-rich tract
tgttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatattcatgttttattatgaaatttaaacactggctaacagttttaagttaggacaccaatgaccaatctcttgtgaactctgttattcctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -tcatgtt
- - - - - - - - - - - - - - - -ctggcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - acaccaa