1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaattcttctcaacattaatgttgcacagcatctcttgttggttaccacatacttttctttgctatccttgatttcctttattcttcttttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG
species | Glycine max |
transcript | GLYMA02G12930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|151412856|gb|EV282668.1|EV282668
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|207840744|gb|GD810937.1|GD810937
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|18040616|gb|BM308910.1|BM308910
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTEST: gi|37994792|gb|CF806381.1|CF806381
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTT
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|10843368|gb|BF067173.1|BF067173
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|15813620|gb|BI785895.1|BI785895
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|7232421|gb|AW567777.1|AW567777
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|4306793|gb|AI443955.1|AI443955
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|192296241|gb|FG991567.1|FG991567
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAC GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|7925477|gb|AW831503.1|AW831503
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TGATTCCTTCTTCCGGATCAGCAGAAGCCT-GCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|15814301|gb|BI786576.1|BI786576
genomic: TGATTCCTTCTTCCGGATCAGCAGAAGC-TAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|192318665|gb|FK006211.1|FK006211
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTCCAAGACTGACCAAGAAAGEST: gi|16348185|gb|BI973780.1|BI973780
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|14011701|gb|BG726623.1|BG726623
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|17021581|gb|BM092615.1|BM092615
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGEST: gi|18690824|gb|BM519672.1|BM519672
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|21887789|gb|BQ741002.1|BQ741002
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|298187449|gb|HO034598.1|HO034598
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACEST: gi|33390149|gb|CA853356.1|CA853356
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGAC
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|57574121|gb|CX547096.1|CX547096
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|14258542|gb|BG881450.1|BG881450
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|208081589|gb|GD882047.1|GD882047
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|192326726|gb|FK018883.1|FK018883
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTCCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|14989883|gb|BI315564.1|BI315564
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|7924046|gb|AW830054.1|AW830054
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|16347707|gb|BI973302.1|BI973302
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|38193306|gb|CF922512.1|CF922512
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|192318664|gb|FK006210.1|FK006210
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTCCAAGACTGACCAAGAAAG
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
taccacatacttttctttgctatccttgatttcctttattcttcttttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG
ttttgat putative branch site (score: 4)
cttttctttgctatcc CT-rich tract
tttattcttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaattcttctcaacattaatgttgcacagcatctcttgttggttaccacatacttttctttgctatccttgatttcctttattcttcttttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG