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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctttttctcttttatttatttaacattgaaatattggatacttttatgttttattatgttgactgactcaactggttatatgtcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCCATTCTTGCCAGTGGTTTGCCCACATCAGAAGATTCAGAGC

Basic information

species Glycine max
transcript GLYMA02G12030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12030.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G26810.1 (Arabidopsis thaliana), 3'ss of exon 3
gtacattctttttctcttttatttatttaacattgaaatattggatacttttatgttttattatgttgactgactcaactggttatatgtcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCCATTCTTGCCAGTGGTTTGCCCACATCAGAAGATTCAGAGC
|||   || |      | |||| |||||  |         | | |   ||  ||    | ||  ||        |    |  |  | | ||||||  |||| || ||||| || |||||||||   ||  |||| ||| | |  |||||||||||||||||||| |||||||||||||||||||| |||||||
gtaatatcatcactcttcttatatatttttctactgctcttagcaattttccatcaaatgtttagtgtctcatatgggttcttcgtctttcagACACTGGAACCGTGGCTTGTTAGTGAAATACGGATTACAGGTGACTTTAGGTTAATATCCATTCTTGCCAGCGGTTTGCCCACATCAGAAGAATCAGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattggatacttttatgttttattatgttgactgactcaactggttatatgtcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCCATTCTTGCCAGTGGTTTGCCCACATCAGAAGATTCAGAGC
                             gactgac  putative branch site (score: 2)
      atacttttatgtttta  TA-rich tract